Carrot Cream Cheese Cupcakes

These Carrot Cream Cheese Cupcakes are a delightful twist on the classic carrot cake—moist, spiced cupcakes with a luscious cream cheese center, topped with a buttery crumble and vanilla glaze. They’re perfect for parties, brunches, or a sweet treat anytime. With a balance of warmth from cinnamon and nutmeg and the creamy richness of the filling, these cupcakes offer bakery-level flavor with easy-to-follow steps right from your kitchen.

Full Recipe:

Ingredients

For the Cupcake Batter:

  • 1½ cups all-purpose flour

  • 1 cup granulated sugar

  • ½ cup unsalted butter, softened

  • 2 large eggs

  • ½ cup milk

  • 1 tsp vanilla extract

  • 1 tsp baking powder

  • ½ tsp baking soda

  • ¼ tsp salt

  • 1½ cups grated carrots

  • 1 tsp ground cinnamon

  • ½ tsp ground nutmeg

For the Cream Cheese Filling:

  • 8 oz cream cheese, softened

  • ¼ cup powdered sugar

  • 1 tsp vanilla extract

For the Crumble Topping:

  • ¼ cup all-purpose flour

  • 2 tbsp brown sugar

  • 2 tbsp unsalted butter, melted

  • ½ tsp ground cinnamon

For the Glaze:

  • ½ cup powdered sugar

  • 2 tbsp milk

  • ½ tsp vanilla extract

Directions

  1. Preheat Oven:
    Preheat to 350°F (175°C). Line a cupcake tray with paper liners.

  2. Make the Cupcake Batter:

    • Cream butter and sugar until light and fluffy.

    • Beat in eggs one at a time, then stir in vanilla.

    • In a separate bowl, whisk together dry ingredients.

    • Add dry mixture to wet mixture in batches, alternating with milk.

    • Fold in grated carrots.

  3. Bake:

    • Fill cupcake liners about ⅔ full.

    • Bake 18–20 minutes, or until a toothpick comes out clean.

    • Let cool completely.

  4. Prepare Cream Cheese Filling:

    • Mix cream cheese, powdered sugar, and vanilla until smooth.

  5. Make Crumble Topping:

    • Combine flour, brown sugar, melted butter, and cinnamon until crumbly.

  6. Assemble Cupcakes:

    • Cut a small center hole in each cooled cupcake.

    • Fill with cream cheese mixture using a piping bag or spoon.

  7. Add Glaze & Topping:

    • Mix glaze ingredients until smooth.

    • Drizzle over filled cupcakes.

    • Sprinkle with crumble topping.

  8. Serve:

    • Let set and serve at room temperature.

Nutrients (Per Cupcake)

  • Calories: 290

  • Carbohydrates: 36 g

  • Protein: 4 g

  • Fat: 15 g

  • Saturated Fat: 9 g

  • Sugar: 24 g

  • Sodium: 190 mg

  • Vitamin A: 20% DV

  • Calcium: 5% DV

  • Iron: 6% DV

Why These Cupcakes Are So Irresistible

Carrot cake is already a fan favorite thanks to its moist texture, gentle sweetness, and warm spice blend. But what makes these cupcakes even more special is the hidden core of sweetened cream cheese—creamy and tangy, offering the perfect contrast to the spiced cake. Topped with a crumbly streusel and a light drizzle of glaze, these cupcakes deliver layers of texture and flavor in every bite.

What’s more, they’re deceptively simple to make. With basic ingredients and a straightforward baking process, these cupcakes feel like something from a high-end bakery but come together with ease right in your home kitchen.

The Cupcake Batter: Moist, Light, and Perfectly Spiced

The base of these cupcakes starts with a classic cake batter that incorporates finely grated carrots for moisture and texture. Unlike dense traditional carrot cake, this version is fluffier and lighter, thanks to the creamed butter and sugar and the use of both baking powder and soda. The balance of cinnamon and nutmeg adds cozy warmth without overpowering the natural sweetness of the carrots.

The batter is also versatile—if you want to sneak in a handful of finely chopped nuts (like walnuts or pecans) or even a bit of shredded coconut or crushed pineapple, it can easily accommodate those extras for added depth.

The Cream Cheese Filling: Rich and Tangy Surprise

The cream cheese center is what truly elevates these cupcakes. Made from just three ingredients—cream cheese, powdered sugar, and vanilla—it adds a luxurious, tangy element that cuts through the sweetness of the cake. When baked into the center, it softens but holds its shape, offering a beautiful creamy surprise when you take a bite.

You can pipe the filling into the cupcakes after baking, or if you’re feeling adventurous, you can also add a small dollop of filling in the middle of the batter before baking and cover it with a little extra batter to conceal it. Either way, the result is magical.

The Crumble Topping: Buttery Crunch Meets Warm Spice

A simple crumble topping of flour, brown sugar, melted butter, and cinnamon adds a rich, crumbly texture that mimics the top of a streusel muffin. It’s buttery, spiced, and contrasts beautifully with the soft cake and smooth cream cheese.

Adding the crumble after baking helps it stay crisp and keeps it from sinking into the cupcake, ensuring a delightful crunch on top.

The Vanilla Glaze: Sweet and Glossy Finish

A quick vanilla glaze ties everything together with a touch of sweetness and shine. Just powdered sugar, milk, and vanilla whisked until smooth—it adds a lovely finishing touch without overpowering the cupcake. The glaze trickles down over the crumble and into the cupcake’s ridges, adding visual appeal and a touch of indulgence.

You can also switch things up by adding a bit of orange zest or maple syrup to the glaze for an extra flavor twist that pairs beautifully with the carrot and spice notes.

Perfect for Every Occasion

These cupcakes are ideal for a wide range of occasions:

  • Brunches or Baby Showers – Their homey yet elegant look makes them a showstopper on a dessert table.

  • Holiday Gatherings – Warm spices and cream cheese make them a natural choice for fall or spring holidays.

  • Bake Sales or Picnics – They travel well and can be made a day ahead.

  • Everyday Treat – Freezer-friendly and easy to store, they’re a great make-ahead option for whenever the craving hits.

They’re sweet but not cloying, indulgent but not heavy, and best of all—each cupcake is its own little layered dessert.

Tips for Baking Success

  • Use freshly grated carrots – Pre-shredded carrots are often too dry. Fresh carrots add more moisture and flavor.

  • Don’t overmix – Once you add the dry ingredients, mix until just combined to avoid a dense texture.

  • Cool completely before filling – If the cupcakes are even slightly warm, the cream cheese filling will melt and slide out.

  • Use a piping bag or small spoon – When filling the centers, precision helps keep the presentation clean.

  • Store in the fridge – Because of the cream cheese filling, store cupcakes in an airtight container in the fridge for up to 4 days. Let come to room temperature before serving for best texture and flavor.

While these are certainly a treat, the carrots provide a good dose of vitamin A, and the use of whole ingredients makes them a wholesome dessert choice compared to overly processed options.

Conclusion

Carrot Cream Cheese Cupcakes are a delightful, bakery-style dessert that combines moist, spiced carrot cake with a tangy cream cheese surprise, all topped with buttery crumble and sweet glaze. They strike the perfect balance between comfort food and elegant dessert, offering layers of flavor, texture, and visual appeal. Whether you’re baking for a celebration or simply treating yourself, these cupcakes are a foolproof way to impress—with warmth, richness, and just the right touch of sweetness in every bite.

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